80,134 research outputs found

    Developmental constraints on vertebrate genome evolution

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    Constraints in embryonic development are thought to bias the direction of evolution by making some changes less likely, and others more likely, depending on their consequences on ontogeny. Here, we characterize the constraints acting on genome evolution in vertebrates. We used gene expression data from two vertebrates: zebrafish, using a microarray experiment spanning 14 stages of development, and mouse, using EST counts for 26 stages of development. We show that, in both species, genes expressed early in development (1) have a more dramatic effect of knock-out or mutation and (2) are more likely to revert to single copy after whole genome duplication, relative to genes expressed late. This supports high constraints on early stages of vertebrate development, making them less open to innovations (gene gain or gene loss). Results are robust to different sources of data-gene expression from microarrays, ESTs, or in situ hybridizations; and mutants from directed KO, transgenic insertions, point mutations, or morpholinos. We determine the pattern of these constraints, which differs from the model used to describe vertebrate morphological conservation ("hourglass" model). While morphological constraints reach a maximum at mid-development (the "phylotypic" stage), genomic constraints appear to decrease in a monotonous manner over developmental time

    Improved determination of Q-factor and resonant frequency by a quadratic curve-fitting method

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    The Q-factor and peak frequency of resonant phenomena give useful information about the propagation and storage of energy in an electronic system and therefore its electromagnetic compatibility performance. However, the calculation of Q by linear interpolation of a discrete frequency response to obtain the half-power bandwidth can give inaccurate results, particularly if the data are noisy or the frequency resolution is low. We describe a more accurate method that makes use of the Lorentzian shape of the resonant peaks and involves fitting a second-order polynomial to the reciprocal power plotted against angular frequency. We demonstrate that this new method requires less than one quarter the number of frequency points as the linear method to give comparable accuracy in Q. The new method also gives comparable accuracy for signal-to-noise ratios that are approximately 8 dB greater. It is also more accurate for determination of peak frequency. Examples are given both from measured frequency responses and from simulated data obtained by the transmission line matrix method

    Altogether Better - Mental Health and Employment. Thematic evaluation summary

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    Cointegration in fractional systems with unknown integration orders.

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    Cointegrated bivariate nonstationary time series are considered in a fractional context, without allowance for deterministic trends. Both the observable series and the cointegrating error can be fractional processes. The familiar situation in which the respective integration orders are 1 and 0 is nested, but these values have typically been assumed known. We allow one or more of them to be unknown real values, in which case Robinson and Marinucci (1997,2001) have justified least squares estimates of the cointegrating vector, as well as narrow-band frequency-domain estimates, which may be less biased. While consistent, these estimates do not always have optimal convergence rates, and they have non-standard limit distributional behaviour. We consider estimates formulated in the frequency domain, that consequently allow for a wide variety of (parametric) autocorrelation in the short memory input series, as well as time-domain estimates based on autoregressive transformation. Both can be interpreted as approximating generalized least squares and Gaussian maximum likelihood estimates. The estimates share the same limiting distribution, having mixed normal asymptotics (yielding Wald test statistics with χ2 null limit distributions), irrespective of whether the integration orders are known or unknown, subject in the latter case to their estimation with adequate rates of convergence. The parameters describing the short memory stationary input series are √n-consistently estimable, but the assumptions imposed on these series are much more general than ones of autoregressive moving average type. A Monte Carlo study of finite-sample performance is included.
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